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plink 软件core dumped报错怎么办

发表于:2024-11-11 作者:千家信息网编辑
千家信息网最后更新 2024年11月11日,本篇文章为大家展示了plink 软件core dumped报错怎么办,内容简明扼要并且容易理解,绝对能使你眼前一亮,通过这篇文章的详细介绍希望你能有所收获。在使用plink1.9版本时遇到core d
千家信息网最后更新 2024年11月11日plink 软件core dumped报错怎么办

本篇文章为大家展示了plink 软件core dumped报错怎么办,内容简明扼要并且容易理解,绝对能使你眼前一亮,通过这篇文章的详细介绍希望你能有所收获。

在使用plink1.9版本时遇到core dumped报错,运行命令如下:

/share/work/biosoft/plink/plink_v1.9/plink --vcf  /share/nas1/wangq/project/pop_test/pop_cucu_demo/work/ann/1.qc_filter/filtered_snp.vcf.gz --make-bed --extract ld.prune.in --out LDfiltered --recode vcf-iid  --keep-allele-order  --allow-extra-chr --set-missing-var-ids @:#

报错信息如下:

PLINK v1.90b3.32 64-bit (24 Feb 2016)      https://www.cog-genomics.org/plink2(C) 2005-2016 Shaun Purcell, Christopher Chang   GNU General Public License v3Logging to LDfiltered.log.Options in effect:  --allow-extra-chr  --extract ld.prune.in  --keep-allele-order  --make-bed  --out LDfiltered  --recode vcf-iid  --set-missing-var-ids @:#  --vcf /share/nas1/wangq/project/pop_test/pop_cucu_demo/work/ann/1.qc_filter/filtered_snp.vcf.gz128701 MB RAM detected; reserving 64350 MB for main workspace.--vcf: LDfiltered-temporary.bed + LDfiltered-temporary.bim +LDfiltered-temporary.fam written.9696 variants loaded from .bim file.9696 missing IDs set.114 people (0 males, 0 females, 114 ambiguous) loaded from .fam.Ambiguous sex IDs written to LDfiltered.nosex .--extract: 435 variants remaining.Using 1 thread (no multithreaded calculations invoked.Before main variant filters, 114 founders and 0 nonfounders present.Calculating allele frequencies... done.Total genotyping rate is 0.952531.435 variants and 114 people pass filters and QC.Note: No phenotypes present.--make-bed to LDfiltered.bed + LDfiltered.bim + LDfiltered.fam ... done.--recode vcf-iid to LDfiltered.vcf ... done.Segmentation fault (core dumped)

尝试各种方法后使用2.0版本plink后没有再遇到该报错。

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